The following outlines the use on an iPad, however, the approach will be very similar for other devices but the apps will differ. It is based on the following assumptions; the lecture uploads a version of the powerpoint slides to their LearnUCS modules before the lecture, you have the app, you also have a stylus, have a Dropbox file storage and GoodNotes or a similar app for annotating docs and PDFs on your device.
The workflow I used was as follows;
In the lecture room I opened the Mobile Learn app, navigated to the appropriate course, clicked on the required powerpoint. The following window opened, and I clicked on the Powerpoint name. Do not select view in browser.

The powerpoint is displayed in the window. However, I clicked on the Open In ... icon and selected my GoodNotes app. I use this to annotated docs and PDFs.

This opened the app with the file in the GoodNotes app and I annotated using the stylus. To complete the process, at the end of the lecture I saved the annotated file to my Dropbox space as a PDF.
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